PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G029775.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C3H
Protein Properties Length: 438aa    MW: 47771.9 Da    PI: 8.3664
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G029775.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.95.4e-115378227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                          ++  C+++ rtG C++G++C+F+H+p
  HL.SW.v1.0.G029775.1 53 GEQDCSYYIRTGLCRFGATCRFNHPP 78
                          6789********************97 PP

2zf-CCCH31.72.6e-1097117727
                           SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   7 rffartGtCkyGdrCkFaHgp 27 
                           ++f++tGtCk+G++CkF+H++
  HL.SW.v1.0.G029775.1  97 QYFLKTGTCKFGATCKFHHPR 117
                           59*****************96 PP

3zf-CCCH35.61.6e-11139162326
                           S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                           + +C +++rtG+Ck+G++CkF+H+
  HL.SW.v1.0.G029775.1 139 ETECAYYLRTGQCKFGSTCKFHHP 162
                           578********************8 PP

4zf-CCCH38.61.7e-12297323127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           +++++C+f+++tG Ck+G+ CkF+H++
  HL.SW.v1.0.G029775.1 297 PGQPECQFYMKTGDCKFGAVCKFHHPR 323
                           5789*********************96 PP

5zf-CCCH40.15.9e-13343369127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           ++++lC f++r+G+Ck+G++CkF H++
  HL.SW.v1.0.G029775.1 343 PGEPLCIFYSRYGICKFGPSCKFDHPM 369
                           589**********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.3335179IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-55178IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-75378IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-55479IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-45777IPR000571Zinc finger, CCCH-type
SMARTSM003560.02494117IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-897117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.77597118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-498117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.169136164IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-5136163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6137164IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-9139162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4142161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502296324IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-6296323IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-9298323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-6300326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-5302324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709342370IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7342369IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-10344369IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5345369IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-4347367IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MEFDGGIIPM SHLAPVTEAA PSLSPSFSED AMWQMNLRSS ETMESGTYPE RPGEQDCSYY  60
IRTGLCRFGA TCRFNHPPNR KLAIATARMK GEFPERQYFL KTGTCKFGAT CKFHHPRDKA  120
GIAGRVSLNM LGYPLRPNET ECAYYLRTGQ CKFGSTCKFH HPSPTNMMVS MRGSPVYPTV  180
QSPTTPGQQS YLGGITNWSR ASFIPSPRWQ GSSSYAPLIV PQGMVSVPGW NTYSGQLGSV  240
SSPDNQPAAG NSQMYGTSRQ SDQANTGSQG TYSPYRSGSV PVGFYALPRE NVFPERPGQP  300
ECQFYMKTGD CKFGAVCKFH HPRERLIPAP DCVLSPMGLP LRPGEPLCIF YSRYGICKFG  360
PSCKFDHPMG IFTYNLSASS SPDAPVLRLL GSSSGTAQLN FSSEGLAEAG STKARRLSLA  420
ETRQMPPGDD SNTDTED*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010111067.10.0Zinc finger CCCH domain-containing protein ZFN-like protein
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLW9SVH00.0W9SVH0_9R
STRINGVIT_04s0023g00370.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1